TREND
TRee-based Exploration of Neighborhoods and Domains
gene-neighborhoods

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Set options

Redundancy (CD-HIT):

Alignment (Mafft):

Alignment Algorithm:

Tree Building:

A.A. Substitution Model:
Phylogeny Test:
Number of replicates:
Tree Building Method:
A.A. Substitution Model:
A.A. Substitution Model:
A.A. Substitution Rate:
Initial tree for ML:
Gaps and Missing Data:
Site Coverage Cutoff:
Phylogeny Test:
Phylogeny Test:
Number of replicates:

Gene neighbors:

Number of neighboring genes on one side (max 15):
Operon tolerance:
Not shared domains tolerance:

Enumerate:
true

Wrong format. Expected sequences in fasta format or tree in newick format. To start the analysis you need to choose a file or paste its content in the area above. There should be at least 3 protein sequences to start the analysis. Malformed newick tree. Please correct the tree. You can't both provide sequences and check 'Retrieve sequences'